PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g42633.1.p
Common NameBRADI_3g42633, LOC104584262
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 188aa    MW: 19209.4 Da    PI: 9.6325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g42633.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000175476123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C ++F ++  L  H++ H
  Bradi3g42633.1.p 54 FSCTYCRRRFYSSQALGGHQNAH 76
                      89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-65081No hitNo description
Gene3DG3DSA:3.30.160.606.8E-45079IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0325481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MERAAPGGEV NLDLRLLHHS TVAAAAAARR QHVTPMPMPV PAGGVSEGGG DRSFSCTYCR  60
RRFYSSQALG GHQNAHKLER SLAKRSRDLS SAVAGIAGAA SSSSSPPSPA DLMIIGSSSW  120
YPPPRGSGSG DHHVVVDQAA AGSPSAAAAA AVVSWIADGA GRRRHSGYHT RVHAGAEDDG  180
IDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039282e-52AP003928.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1150_A11.
GenBankAP0054802e-52AP005480.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0439B07.
GenBankAP0149642e-52AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-52CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236785.11e-131PREDICTED: zinc finger protein GIS-like
TrEMBLA0A0Q3FM901e-131A0A0Q3FM90_BRADI; Uncharacterized protein
STRINGLOC_Os08g44190.17e-34(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-17zinc finger protein 2